I found this blog post Comparison Framework Sample: BOM Version comparer.
Mkz created a BOM version comparer based on the comparison framework tutorial allowing you to see the line by line differences between BOM versions. I made a quick upgrade to AX 2012 and it now compiles without best practice errors.
Note: The performance is not very good, when the BOM is complex with many levels and many bom lines over the levels.
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